update build token/user and docker packages - Githubissues

d3b-center / OpenPedCan-analysis

The analysis repository for the Open Pediatric Cancer Project

https://d3b-center.github.io/OpenPedCan-analysis/

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update build token/user and docker packages #575

Closed jharenza closed 2 months ago

jharenza commented 2 months ago

Purpose/implementation Section

What scientific question is your analysis addressing?

What was your approach?

update packages:

snakemake 8.1.2 -> 8.11.6
add immune deconv latest release 2.1.3
update signature.tools.lib to latest 59a3a3236f16f0c1383d0ab125fec8a251d7f42d

Redirect docker image to openpedcanverse and update README

What GitHub issue does your pull request address?

NA

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
[ ] This analysis has been added to continuous integration.

Documentation Checklist

[ ] This analysis module has a README and it is up to date.
[ ] This analysis is recorded in the table in analyses/README.md and the entry is up to date.
[ ] The analytical code is documented and contains comments.