d3b-center / OpenPedCan-analysis

The analysis repository for the Open Pediatric Cancer Project
https://d3b-center.github.io/OpenPedCan-analysis/
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Pathology review of MB samples with high-conf other subtypes needed #593

Closed jharenza closed 1 week ago

jharenza commented 4 months ago

What data file(s) does this issue pertain to?

histologies.tsv

What release are you using?

v15

Put your question or report your issue here.

During review of #565 and #570 , it appears a few MB-SHH tumors have high-confidence methylation subtypes for other embryonal tumor types and pathology report review suggests these could be possible mis-diagnoses due to not having genomic or methylation information at the time of diagnosis. Will need to review with pathology in order to update the diagnoses in molecular-subtype-integrate.

mb_differentials.xlsx

jharenza commented 1 week ago

now https://github.com/rokitalab/OpenPedCan-Project/issues/12, need to follow up with Mariarita