molecular-subtyping-MB analysis module 05-subtype-mb-shh.R script needs to be updated so that the final_shh_subtype column is added to abridged output mb_shh_molecular_subtypes.tsv, instead of the column SHH_subtype which only reports methylation-derived classifications
What changes need to be made? Please provide enough detail for another participant to make the update.
What input data should be used? Which data were used in the version being updated?
When do you expect the revised analysis will be completed?
jharenza
commented
2 months ago
What analysis module should be updated and why?
molecular-subtyping-MBanalysis module05-subtype-mb-shh.Rscript needs to be updated so that thefinal_shh_subtypecolumn is added to abridged outputmb_shh_molecular_subtypes.tsv, instead of the columnSHH_subtypewhich only reports methylation-derived classificationsWhat changes need to be made? Please provide enough detail for another participant to make the update.
What input data should be used? Which data were used in the version being updated?
When do you expect the revised analysis will be completed?
Who will complete the updated analysis?
@rjcorb