Read expression file

[km-2021]

What data file(s) does this issue pertain to?

What version are you using?

Put your question or report your issue here.

Is the following code correct for loading the Expression file?

expressionFile <- ("expressionfilename.gz")

[jharenza]

expressionFile <- ("expressionfilename.gz")

Depending on the format of your file, and the libraries you have installed you would read in the file various ways:

using tidyverse and a tsv:

expressionFile <- read_tsv("expressionfilename.tsv.gz")

using base R reading in an RDS file:

expressionFile <- readRDS("expressionfilename.RDS.gz")

using base R reading in an RData file:

load("expressionfilename.RDA.gz", verbose = TRUE)