🍱 update histologies file with manual diagnoses

[chris-s-friedman]

🍱 update histologies file with manual diagnoses

• [x] closes #100
• [ ] README entry added if new functionality
• [ ] fixup commits are appropriately squashed
• [ ] submission_packet has been regenerated and committed as last commit in this PR

Update the histologies with manually fixed diagnoses for:

• PT_GQZ84ACS
• PT_DACV00WF
• PT_1KEER2Q1

This is done by setting the value of the pathology_diagnosis column manually. inserted before this line in fetch_histologies.py:

def manual_fix(row):
    if row['Kids_First_Participant_ID'] =='PT_1KEER2Q1':
        return "Low-grade glioma/astrocytoma (WHO grade I/II)"
    elif row['Kids_First_Participant_ID'] =='PT_GQZ84ACS':
        return "Low-grade glioma/astrocytoma (WHO grade I/II)"
    elif row['Kids_First_Participant_ID'] =='PT_DACV00WF':
        return "Medulloblastoma"
    else:
        return row['pathology_diagnosis']

histologies['pathology_diagnosis'] = histologies.apply(manual_fix, axis=1)