d3b-center / d3b-cds-manifest-prep

scripts to prep manifests for cds
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🏷 Release 0.14.0 #125

Closed chris-s-friedman closed 1 year ago

chris-s-friedman commented 1 year ago

Release 0.14.0

Updates to diagnoses

This release includes a few updates to diagnoses:

  1. remove diagnoses from the histologies file that were manually assigned, that are attached to normal samples.
  2. Only include normal samples in the diagnosis-sample mapping table.
  3. test that only and all tumor samples are in the diagnosis-sample mapping table.
  4. if a participant's only samples in CDS are normal, and all of those samples only come from events that have only normal samples, extract the diagnoses from other events for the participant. Set the diagnosis ID to be based of the C-ID instead of the 7316 ID.

Summary

New features and changes