issues
search
d3b-center
/
d3b-cds-manifest-prep
scripts to prep manifests for cds
Apache License 2.0
1
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
📝 add docstrings for build_manifest functions
#101
chris-s-friedman
closed
1 year ago
0
Submission Package bug - Diagnoses Not Reported
#100
chris-s-friedman
closed
1 year ago
2
✨ return output tables in build functions
#99
chris-s-friedman
closed
1 year ago
0
🔧 ignore .DS_Store files
#98
chris-s-friedman
closed
1 year ago
0
Feature Request: try to incorporate bailey's testing harness
#97
chris-s-friedman
opened
1 year ago
0
🔧 update issue templates to forms
#96
chris-s-friedman
closed
1 year ago
0
order IDs in the output manifests
#95
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.10.0
#94
chris-s-friedman
closed
1 year ago
0
🐛 reset indices of diagnosis table before splitting and joining
#93
chris-s-friedman
closed
1 year ago
0
Submission Package bug - diagnosis-sample mapping
#92
chris-s-friedman
closed
1 year ago
5
✨ add testing for samples in sample diagnoses manifest
#91
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.9.0
#90
chris-s-friedman
closed
1 year ago
0
🐛 file id comes before sample in genomic_info
#89
chris-s-friedman
closed
1 year ago
0
🐛 fix issue where diagnosis ids weren't unique
#88
chris-s-friedman
closed
1 year ago
0
Submission Package bug - sample in genomic_info not in sample
#87
chris-s-friedman
closed
1 year ago
1
Submission Package bug - genomic_info values not in enums
#86
chris-s-friedman
closed
1 year ago
1
Submission Package bug -
#85
chris-s-friedman
closed
1 year ago
1
Submission Package bug -
#84
chris-s-friedman
closed
1 year ago
0
✨ order columns in output manifests
#83
chris-s-friedman
closed
1 year ago
0
🧑💻 order columns in the output manifests by default
#82
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.8.1
#81
chris-s-friedman
closed
1 year ago
0
🐛 add sample missing from bix manifest
#80
chris-s-friedman
closed
1 year ago
0
Submission Package bug - missing sample and files
#79
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.8.0
#78
chris-s-friedman
closed
1 year ago
0
🍱 Use the new mapping table for more accurate genomic info
#77
chris-s-friedman
closed
1 year ago
0
🍱 use csv instead of xlsx for bix manifest
#76
chris-s-friedman
closed
1 year ago
0
🍱 Updated bix manifest to use csv
#75
chris-s-friedman
closed
1 year ago
0
🍱 add new bix manifest to seed genomic_info table
#74
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.7.1
#73
chris-s-friedman
closed
1 year ago
0
🍱 re-generated manifest to get file updates from ds
#72
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.7.0
#71
chris-s-friedman
closed
1 year ago
0
🍱 remove 33 dgd files from mapping and regenerate
#70
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.6.0
#69
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.5.4
#68
chris-s-friedman
closed
1 year ago
0
✨ use pathology_free_text for participants missing dx
#67
chris-s-friedman
closed
1 year ago
0
🚨 fix markdownlint warnings
#66
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.6.0
#65
chris-s-friedman
closed
1 year ago
0
🍱 add updated outputs in diagnosis table
#64
chris-s-friedman
closed
1 year ago
0
🐛 diagnosis_id did not work unless finding_missing_dx
#63
chris-s-friedman
closed
1 year ago
0
♻️ make searching for missing dx in the ds optional
#62
chris-s-friedman
closed
1 year ago
0
📝 add documentation for diagnosis table
#61
chris-s-friedman
closed
1 year ago
0
🔥 remove a breakpoint in diagnosis generator
#60
chris-s-friedman
closed
1 year ago
0
♻️ extract diagnosis from histology in its own func
#59
chris-s-friedman
closed
1 year ago
0
📝 add readme for package data
#58
chris-s-friedman
closed
1 year ago
0
🍱 use openpedcan histologies table
#57
chris-s-friedman
closed
1 year ago
0
🍱 use openpedcan histology file
#56
chris-s-friedman
closed
1 year ago
0
🏷 Release 0.5.3
#55
chris-s-friedman
closed
1 year ago
0
🐛handle participants that are missing diagnoses
#54
chris-s-friedman
closed
1 year ago
2
🐛 save the fsp map
#53
chris-s-friedman
closed
2 years ago
0
✨ save the seed mapping file to the output directory
#52
chris-s-friedman
closed
2 years ago
0
Previous
Next