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d3b-center / d3b_cbtn_summit

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Create setup scripts #1

Closed aadamk closed 1 month ago

aadamk commented 1 month ago

For each module:

  1. create 00-setup.R script that installs the necessary packages for each module.
  2. include 00-setup.R as the first step in each module run script.

A couple of bioc packages to note: clusterProfiler DGCA

An additional package that seemed necessary but wasn't explicitly loaded was broom.helpers.

Date needed: 09/30

komalsrathi commented 1 month ago

Will work on this today. Thanks.

komalsrathi commented 1 month ago

I have added the module specific R scripts and updated corresponding bash scripts.

  1. DGCA doesn't seem to be called anywhere - could you point the scripts where it is needed?
  2. Can you also inform where broom.helpers was necessary? Doesn't seem like it was an issue for me.
komalsrathi commented 1 month ago

Closing as the changes were committed to the master branch.