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d3b-center / hope-cohort-analysis

Analysis for HOPE cohort
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Filter fusion files based on the gene expression #26

Closed zzgeng closed 1 year ago

zzgeng commented 1 year ago

Filter fusion files based on the gene expression with Integer threshold of expression for both gene in fusion partners with TPM<1. Shown as in scripts below.

https://github.com/d3b-center/OpenPedCan-analysis/blob/dev/analyses/fusion_filtering/02-fusion-filtering.R https://github.com/d3b-center/annoFuse/blob/master/R/expression_filter_fusion.R

komalsrathi commented 1 year ago

Hi @zzgeng I am going to work on https://github.com/d3b-center/d3b-hope-cohort-analysis/issues/28 first, and then work on this. I will add you as a reviewer on that PR once created - should be quick.

jharenza commented 1 year ago

completed in #35