Update: Cascade Plots (Top 20 genes) - Githubissues

d3b-center / hope-cohort-analysis

Analysis for HOPE cohort

3 stars 1 forks source link

Update: Cascade Plots (Top 20 genes) #89

Closed komalsrathi closed 4 months ago

komalsrathi commented 6 months ago

Regarding the Updated Cascade plots with 2 age groups + tumor only samples + top 20 genes + CNS_region and Cancer_Group (i.e. cancer_group_short) annotations: https://github.com/d3b-center/hope-cohort-analysis/blob/rerun-analyses/analyses/oncoplots/results/cascade_plots_add_tumor_only/cascade_two_age_groups_orderby_age_top20genes.pdf

I made the following modifications in photoshop: cascade_two_age_groups_orderby_age_top20genes (1) copy These changes included the folloiwng:

removal of CNS_region, and Molecular_subtype
Adding the PXA as the additional Cancer group and adding corresponding color to the annotation column
introducing the flag Could you apply these in the new version? (I can make the flag in the photoshop)

Additional changes needed:

replacing the abbreviations DHG, DMG, HGG, IHG and PXA with: (DHG) Diffuse Hemispheric Glioma (DMG) Diffuse Midline Glioma (HGG) High Grade Glioma (not otherwise specified) (IHG) Infantile High Grade Glioma (PXA) Pleomorphic Xanthoastrocytoma
removal of underscore from the columns annotation and side annotations

Originally posted by @mkoptyra in https://github.com/d3b-center/hope-cohort-analysis/issues/77#issuecomment-1870516397