d3b-center / pbta-splicing

Splicing analysis across the PBTA
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Updated analysis: histology specific plots re-do #112

Closed naqvia closed 1 year ago

naqvia commented 1 year ago

What analysis module should be updated and why?

Re-generate UpSetR plots in the Splicing Index Module to integrate latest samples.

What changes need to be made? Please provide enough detail for another participant to make the update.

New samples and restructuring of the script orders.

What input data should be used? Which data were used in the version being updated?

histologies.tsv
splice-events-rmats.tsv.gz
independent-specimens.rnaseqpanel.primary.tsv
independent-specimens.rnaseqpanel.primary-plus.tsv

When do you expect the revised analysis will be completed?

TBD

Who will complete the updated analysis?

@naqvia

naqvia commented 1 year ago

PR merged and completed.