We want to assess if SRSF1 expression levels are correlated with Exon 4 inclusion. Previous studied have found high density of binding sites within Exon 4, suggesting that SRSF1 controls exon 4 inclusion levels.
What methods do you plan to use to accomplish the scientific goals?
Pearson correlation
What input data are required for this analysis?
SRSF1 expression and CLK1 Exon 4 PSI
How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?
1-2 days
Who will complete the analysis (please add a GitHub handle here if relevant)?
@naqvia
What relevant scientific literature relates to this analysis?
jharenza
commented
12 months ago
What are the scientific goals of the analysis?
We want to assess if SRSF1 expression levels are correlated with Exon 4 inclusion. Previous studied have found high density of binding sites within Exon 4, suggesting that SRSF1 controls exon 4 inclusion levels.
What methods do you plan to use to accomplish the scientific goals?
Pearson correlation
What input data are required for this analysis?
SRSF1 expression and CLK1 Exon 4 PSI
How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?
1-2 days
Who will complete the analysis (please add a GitHub handle here if relevant)?
@naqvia
What relevant scientific literature relates to this analysis?
https://linkinghub.elsevier.com/retrieve/pii/S0378-1119(18)30592-4