We want to assess if SRSF1 expression levels are correlated with Exon 4 inclusion. Previous studied have found high density of binding sites within Exon 4, suggesting that SRSF1 controls exon 4 inclusion levels.
What methods do you plan to use to accomplish the scientific goals?
Pearson correlation
What input data are required for this analysis?
SRSF1 expression and CLK1 Exon 4 PSI
How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?
1-2 days
Who will complete the analysis (please add a GitHub handle here if relevant)?
@naqvia
What relevant scientific literature relates to this analysis?
What are the scientific goals of the analysis?
We want to assess if SRSF1 expression levels are correlated with Exon 4 inclusion. Previous studied have found high density of binding sites within Exon 4, suggesting that SRSF1 controls exon 4 inclusion levels.
What methods do you plan to use to accomplish the scientific goals?
Pearson correlation
What input data are required for this analysis?
SRSF1 expression and CLK1 Exon 4 PSI
How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?
1-2 days
Who will complete the analysis (please add a GitHub handle here if relevant)?
@naqvia
What relevant scientific literature relates to this analysis?
https://linkinghub.elsevier.com/retrieve/pii/S0378-1119(18)30592-4