What scientific question is your analysis addressing?
This PR adds a v9 release with only the tumor only maf being updated. It was re-merged since OPC v15 and previous versions did not contain SIFT, polyphen, which are being used in the oncoprint module
What was your approach?
What GitHub issue does your pull request address?
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Is there anything that you want to discuss further?
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Results
What types of results are included (e.g., table, figure)?
What is your summary of the results?
Reproducibility Checklist
[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.
Documentation Checklist
[ ] This analysis module has a README and it is up to date.
[ ] The analytical code is documented and contains comments.
Purpose/implementation Section
What scientific question is your analysis addressing?
This PR adds a v9 release with only the tumor only maf being updated. It was re-merged since OPC v15 and previous versions did not contain SIFT, polyphen, which are being used in the oncoprint module
What was your approach?
What GitHub issue does your pull request address?
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Is there anything that you want to discuss further?
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Results
What types of results are included (e.g., table, figure)?
What is your summary of the results?
Reproducibility Checklist
Documentation Checklist
READMEand it is up to date.