d3b-center / pbta-splicing

Splicing analysis across the PBTA

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update HGG,MB,ATRT surv models with resection covariates #423

Closed rjcorb closed 2 months ago

rjcorb commented 2 months ago

Purpose/implementation Section

What scientific question is your analysis addressing?

Closes #422. This PR adds resection covariates to ATRT, HGG, and MB cox proportional hazards survival models

What was your approach?

What GitHub issue does your pull request address?

422

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Please review updated code and ensure module runs successfully and results are as expected:

bash run-survival-module.sh

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

[ ] The dependencies required to run the code in this pull request have been added to the project Dockerfile.

Documentation Checklist

[ ] This analysis module has a README and it is up to date.
[ ] The analytical code is documented and contains comments.