update cnv-frequencies tables for v12

[ewafula]

What analysis module should be updated and why?

Update cnv-frequencies module

What changes need to be made? Please provide enough detail for another participant to make the update.

• checkout the branch for PR #340 and create branch off it for this update. The download-data.sh bash script in this branch is already updated for v12 data downloads

  • git checkout -b v12-post-release origin/v12-post-release
  • git branch v12-cnv-freq

• change datatypeId column value for the output tables from somatic_mutation to pediatric_cancer

• rerun the module using v12 data release files

• submit your PR to the v12-post-release branch

• output files are likely to be larger than the maximum limit allowed on GitHub. Include a .gitignore in the results/ directory

What input data should be used? Which data were used in the version being updated?

• module input data files are described in the README and already set in the wrapper bash script.

When do you expect the revised analysis will be completed?

1/2 day

Who will complete the updated analysis?

@zzgeng

[jharenza]

closed with https://github.com/PediatricOpenTargets/OpenPedCan-analysis/pull/345