d3b-center / ticket-tracker-OPC

A repo to generate and track tickets for ped OT
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Updated analysis: Refactoring molecular-subtyping-EPN module #543

Closed zzgeng closed 1 year ago

zzgeng commented 1 year ago

What analysis module should be updated and why?

Update molecular-subtyping-EPN module to include a script to generate JSON file for sample selection. Make sure the format of output files in this module is consistent with other molecular subtyping modules.

What changes need to be made? Please provide enough detail for another participant to make the update.

Add a script to generate JSON file for sample selection.

What input data should be used? Which data were used in the version being updated?

histologies_base.tsv (v12)

When do you expect the revised analysis will be completed?

Who will complete the updated analysis?

jharenza commented 1 year ago

completed with https://github.com/PediatricOpenTargets/OpenPedCan-analysis/pull/363