d3b-center / ticket-tracker-OPC

A repo to generate and track tickets for ped OT
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Remove sample not-consented from methyl matrices #559

Closed ewafula closed 1 year ago

ewafula commented 1 year ago

What are the scientific goals of the analysis?

Remove Kids_First_Biospecimen_ID BS_XA1T7CAX which is not consented from methyl matrices.

What methods do you plan to use to accomplish the scientific goals?

Exclude form methyl matrices

What input data are required for this analysis?

How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?

1 day

Who will complete the analysis (please add a GitHub handle here if relevant)?

@ewafula

What relevant scientific literature relates to this analysis?

NA

jharenza commented 1 year ago

Also remove for aliquot id mixup/uncertainty:

BS_7J80611F
BS_PYYQTG34

@ewafula this is ready to be worked on

jharenza commented 1 year ago

@ewafula I got more clarity from NIH on this - we will keep BS_7J80611F and BS_PYYQTG34.

ewafula commented 1 year ago

@jharenza. This is done — updated matrices and methy-md5sum.txt uploaded to the v13 folder on the s3 bucket.