[RELEASE] v2.0.0

[nightwnvol]

🛠️Changed

• Default ndirs=500 in core.generate_kernels() and in trk2dictionary.run()
• Expire the deprecated ndirs parameter in amico.core.setup()
• Expire the deprecated filename_trk and gen_trk parameters in trk2dictionary.run()
• Removed unused parameter ndirs from trk2dictionary_c.cpp()
• Build output goes into build
• Switched to proprietary license (see LICENSE file)

✨Added

• Added clustering in trk2dictionary.run()

  • geometry-based clustering using blur_clust_thr parameter
  • anatomical information streamlines clustering based on their endpoints using blur_clust_groupby parameter

• Added trk2dictionary.run() parallel computation using n_threads parameter

• Changed internal streamlines representation using blur_core_extent and blur_gauss_extent parameters

• Added possibility to keep temporal files created by parallel trk2dictionary.run() and clustering using keep_temp parameter

• Parallel compilation