added Jupyter notebooks + fixed contrib guidelines + removed old files

dahak-metagenomics / dahak

benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.

https://dahak-metagenomics.github.io/dahak

BSD 3-Clause "New" or "Revised" License

21 stars 4 forks source link

added Jupyter notebooks + fixed contrib guidelines + removed old files #127

Closed brooksph closed 6 years ago

brooksph commented 6 years ago

Merge Checklist

[ ] Typos are a sign of poorly maintained code. Has this request been checked with a spell checker?
[ ] Tutorials should be universally reproducible. If this request modifies a tutorial, does it assume we're starting from a blank Ubuntu 16.04 (Xenial Xerus) image?
[X] Large diffs to binary or data files can artificially inflate the size of the repository. Are there large diffs to binary or data files, and are these changes necessary?

charlesreid1 commented 6 years ago

Am going to make a few commits on this branch; these will be markdown cleanup in the notebooks, and will not change any of the code or results.

charlesreid1 commented 6 years ago

Functional inference notebook in proka_annotation_megahit/, beginning section, has some empty bullet items. Other than that, these notebooks look great to me.