fixef

[arives]

Daijiang,

Could you please change the function fixef so that it doesn't conflict with fixef in lme4? Is there an easy way to do this, allowing fixef to identify the class of object?

Thanks, Tony

[daijiang]

Changed it to fixed_effects().

[arives]

Daijiang,

Couldn't you do this like "fixef.communityPGLMM" so that it wouldn't interfere with fixef in lme4?

Tony

---

Anthony R. Ives UW-Madison 459 Birge Hall 608-262-1519

From: Daijiang Li notifications@github.com Reply-To: daijiang/phyr reply@reply.github.com Date: Tuesday, October 9, 2018 at 4:45 PM To: daijiang/phyr phyr@noreply.github.com Cc: "Anthony R. Ives" arives@wisc.edu, Author author@noreply.github.com Subject: Re: [daijiang/phyr] fixef (#29)

Changed it to fixed_effects().

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[daijiang]

Tony, I tried to, but importing fixef from nlme package failed. There are some annoying issues such as some functions are not exported from nlme namespace. I did not know how to deal with it yet (the issue maintained even I imported the whole nlme package). So instead, I just changed the function name to fixed_effects (fixed.effects is an alias in nlme (and thus lme4)). Is this okay? Daijiang

[daijiang]

Fixed. We can use fixef for communityPGLMM.

[arives]

Great. So you managed to fix fixef in nlme?

[daijiang]

Sort of. I ended with still import fixef from lme4, which was in turn imported from nlme. But I think it works now. ba59852457570e3ab124eba9351ec7a7ac1df458

[arives]

Ugh. Complicated.