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daisybio
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TF-Prioritizer
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
GNU General Public License v3.0
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Added FIMO to the pipeline
#71
LeonHafner
opened
4 months ago
0
collect_tfs.nf bug fixes
#70
LeonHafner
closed
4 months ago
5
Add option for skipping enhancer prediction and adding using a custom bed file as input
#69
nictru
opened
7 months ago
0
ChromHMM enhancer extension
#68
LeonHafner
closed
6 months ago
3
Investigate applicability on single cell datasets
#67
nictru
opened
9 months ago
6
Add DIMMER for methylation
#66
Firestar93
opened
9 months ago
6
Add sneep (Nina Baumgarten et al) to investigate if a SNP is probably destroying a TF motif
#65
Firestar93
opened
9 months ago
3
Add optional signal input for gABC scores
#64
nictru
opened
9 months ago
2
Add scripts for enhancer processing
#63
nictru
closed
6 months ago
3
Add configuration documentation
#62
nictru
closed
9 months ago
1
Prepare FIMO script
#61
nictru
closed
3 months ago
0
Finish data preparation
#60
nictru
opened
10 months ago
0
Prepare base pipeline for usage
#59
nictru
closed
3 months ago
0
Fix HINT narrowPeak input problem
#58
nictru
closed
1 year ago
0
Fix bam input for multiple subgroups
#57
nictru
closed
1 year ago
0
Add log for bam input check
#56
nictru
closed
1 year ago
0
Attempt implementation of single File RNA-Seq input
#55
nictru
closed
1 year ago
0
Fix problem with empty background in distribution analysis
#54
nictru
closed
1 year ago
0
Fix problems with IGV getting stuck
#53
nictru
closed
1 year ago
0
Fix problem with chip atlas no callables found
#52
nictru
closed
1 year ago
0
Disable development mode
#51
nictru
closed
1 year ago
0
Attempt increasing IGV memory
#50
nictru
closed
1 year ago
0
Attempt increasing IGV memory
#49
nictru
closed
1 year ago
0
Remove svg files since rendering is hard
#48
nictru
closed
1 year ago
0
Fix problem with svg file endings
#47
nictru
closed
1 year ago
0
Fix problem with deactivated chip atlas
#46
nictru
closed
1 year ago
0
Implement dynamic plot height
#45
nictru
closed
1 year ago
0
App pipeJar as a local dependency
#44
nictru
closed
1 year ago
0
Make use of pipeJar
#43
nictru
closed
1 year ago
0
Hotfixes
#42
nictru
closed
1 year ago
0
Confusion matrixes
#41
nictru
closed
2 years ago
0
Update angular report
#40
nictru
closed
2 years ago
0
Fix some igv bugs
#39
nictru
closed
2 years ago
0
Improve igv implementation
#38
nictru
closed
2 years ago
0
Fix angular bugs
#37
nictru
closed
2 years ago
0
Make Angular work inside docker
#36
nictru
closed
2 years ago
0
Fix igv
#35
nictru
closed
2 years ago
0
Implement docker environment setup script
#34
nictru
closed
2 years ago
0
Make docker version fully functional
#33
nictru
closed
2 years ago
0
Docker
#32
nictru
closed
2 years ago
0
Impruve binary search trees
#31
nictru
closed
2 years ago
0
Fix csv data in validation bug
#30
nictru
closed
2 years ago
0
Fix csv data not available bug
#29
nictru
closed
2 years ago
0
Fix TEPIC meanAffinities and Ratios not created bug
#28
nictru
closed
2 years ago
0
Fix TEPIC TPM-filter file system bug
#27
nictru
closed
2 years ago
0
Fix TEPIC postprocessing bug
#26
nictru
closed
2 years ago
0
Fix faulty bracket
#25
nictru
closed
2 years ago
0
Hotfixes
#24
nictru
closed
2 years ago
0
Fix tepic output prefix
#23
nictru
closed
2 years ago
0
Fix creation of faulty tepic directory
#22
nictru
closed
2 years ago
0
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