Closed menoldmt closed 1 year ago
The setup.sh script identifies if a user is on the NIH's Biowulf or Helix clusters to determine the conda installation directory. Suggesting similar environment checks for the .path dotfile to ensure appropriate path settings.
This line needs to be configured based on cluster usage detection: https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/.path#L2
Potential location for the configuration to occur: https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/setup.sh#L450
Furthermore, in the docs after these lines, https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/docs/starthere.rst?plain=1#L259 https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/docs/starthere.rst?plain=1#L260C49-L260C49 add:
export PATH="$PATH:~/data/$USER/mambaforge/condabin"
~/.path
The setup.sh script identifies if a user is on the NIH's Biowulf or Helix clusters to determine the conda installation directory. Suggesting similar environment checks for the .path dotfile to ensure appropriate path settings.
This line needs to be configured based on cluster usage detection: https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/.path#L2
Potential location for the configuration to occur: https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/setup.sh#L450
Furthermore, in the docs after these lines, https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/docs/starthere.rst?plain=1#L259 https://github.com/daler/dotfiles/blob/095fc12649d4434cbcb71d3219cfd05eb42a58f6/docs/starthere.rst?plain=1#L260C49-L260C49 add:
export PATH="$PATH:~/data/$USER/mambaforge/condabin"to the :file:~/.path