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daler / gffutils

GFF and GTF file manipulation and interconversion
http://daler.github.io/gffutils
MIT License
283 stars 76 forks source link

spliced sequence extraction #103

Open daler opened 6 years ago

daler commented 6 years ago

xref https://github.com/mdshw5/pyfaidx/pull/127

ewallace commented 6 years ago

Hi Ryan, I'm just hand-implementing a version of this myself. It would be more sensible to join forces and see if I can accelerate a well-tested version within gffutils.

Where are you at, how can I help? Edward

daler commented 6 years ago

Thanks @ewallace. This issue has been lower priority across my projects, so unfortunately I haven't made any progress. It would be great if you could add something to gffutils, and I'd be happy to help integrate and test.