v0.12 rc - Githubissues

daler commented 1 year ago

Fix #216 (remove deprecated OptimizedUnicode text factory)
When interfeatures (like when creating introns) results in features with multiple IDs, concatenate them (#219, thanks @Juke34)
Handle corner cases observed in GRCh38 annotations where a quoted comma in the attributes causes the dialect inference to incorrectly conclude that repeated keys are not present. See #208 for details.
Refactor tests to use pytest instead of the deprecated nosetests (#201, thanks @mr-c)
New create_splice_sites method (#220, thanks @Juke34)

Juke34 commented 1 year ago

Could you merge #220 PR to this one, I would need the multiple IDs issue fixed to add the test, otherwise I merge this one to #220

daler commented 1 year ago

@Juke34 go ahead and merge this one into #220 for writing tests -- I'll hold off releasing if you want to get those changes into v0.12.

I don't want to hold off too long though -- I generally only have time to work on this during holidays and I don't want to miss this time window!

Juke34 commented 1 year ago

Yes please hold the release I would love to have the new function in version 0.12. I will try to look at this evening (GMT+2)

daler / gffutils