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daler
/
gffutils
GFF and GTF file manipulation and interconversion
http://daler.github.io/gffutils
MIT License
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address #128
#185
daler
closed
2 years ago
0
introns = G.interfeatures(exons) gives 0 introns. is it because exon gives unnamed_exon?
#184
jekang39
closed
1 year ago
2
Missing docstring entry
#183
scimerc
closed
2 years ago
1
`id_spec` default can be misleading
#182
scimerc
closed
2 years ago
3
Import of introns fails
#181
Yu-jinKim
closed
2 years ago
2
Pep8 cleanup
#180
daler
closed
2 years ago
0
Refactor iterators
#179
daler
closed
2 years ago
0
v0.11
#178
daler
closed
2 years ago
0
move tests from from travis-ci to github actions
#177
daler
closed
2 years ago
0
Testing actions
#176
daler
closed
2 years ago
0
target branch for v0.11
#175
daler
closed
2 years ago
1
Inconsistent Ordering of exon_number attribute in introns
#174
mbiokyle29
closed
2 years ago
2
Feature.sequence misses last base
#173
kathryncrouch
closed
2 years ago
1
Handle a bug in NCBI gtf
#172
esrice
closed
2 years ago
0
Handle empty string in Quoter
#171
innovate-invent
closed
2 years ago
0
AttributeError: 'FeatureDB' object has no attribute 'strand'
#170
mictadlo
closed
2 years ago
1
Use Context Manager in FileIterator
#169
lowdanie
closed
2 years ago
0
Python3 DeprecationWarning: invalid escape sequence \w
#168
smoe
closed
2 years ago
1
create_db sqlite3.InterfaceError (small genome)
#167
soungalo
closed
2 years ago
3
How to get all chromsome names and featuretypes
#166
zhqu1148980644
closed
2 years ago
1
Fix deprecation warning.
#165
roryk
closed
2 years ago
0
Tasmanian devil transcriptome is not loading in the database
#164
naumenko-sa
closed
2 years ago
2
sort_attribute_values -- how to keep the exons in numerical order
#163
Xiaofei-git
closed
2 years ago
2
fixed bug mentioned in issue #129
#162
husensofteng
closed
2 years ago
0
Proper way to sort/order features after merge?
#161
bbimber
closed
2 years ago
2
Intergenic feature generation
#160
aswarren
closed
2 years ago
1
Repair canonical_transcripts
#159
EFraim
closed
2 years ago
2
Can't get children from NCBI GFF (may be user error)
#158
deannachurch
closed
2 years ago
13
Bug: New merge method does not have "ignore_strand" argument => merge=True throws error
#157
sschmeier
closed
2 years ago
2
Repair canonical_transcripts
#156
EFraim
opened
4 years ago
0
Avoid deadlocks in tests under Python 3.8
#155
stefanor
closed
2 years ago
1
change IDs in a GFF3
#154
mictadlo
closed
2 years ago
1
Better handling of merged components
#153
innovate-invent
closed
1 year ago
2
Fix major issue with merge algorithm, add new merge criteria (v0.10.1rc)
#152
innovate-invent
closed
4 years ago
5
much-improved merging (updated version of PR #130)
#151
daler
closed
4 years ago
0
More issue 119 tests
#150
daler
closed
4 years ago
0
v0.10rc
#149
daler
closed
4 years ago
0
Introducing new attributes and values from data file
#148
igwill
closed
4 years ago
10
inspect.py vs inspection.py?
#147
ewallace
closed
4 years ago
1
creating a file with gene/transcript from exon only lines
#146
lpantano
closed
4 years ago
1
Ensure that tests work post-installation
#145
mr-c
closed
4 years ago
2
'part' is not defined if val_str is empty
#144
innovate-invent
closed
4 years ago
1
Is it possible to create a db only for one chromosome?
#143
lldelisle
closed
4 years ago
2
fix for GFFs with ##FASTA section in python 3.7
#142
pbradz
closed
4 years ago
3
No all features are written to file
#141
mictadlo
closed
4 years ago
1
Id collision resolution broken
#140
abhishekkumaresan
closed
4 years ago
0
Fix interfeatures merge attributes
#139
stekaz
closed
4 years ago
0
Fixes issue #126
#138
njohnso6
closed
5 years ago
1
Generating New Parent Attributes from gene_ID
#137
Jome0169
closed
4 years ago
1
Sync FeatureDB._autoincrements and DBCreator._autoincrements on update()
#136
innovate-invent
closed
5 years ago
3
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