Error on import pypar - Githubissues

abdulbudiaji commented 8 years ago

I recently installed fresh ubuntu14.04. Then I installed mpich2. I forgot whether i have installed openmpi also or not.

I create virtual environment. Install numpy as required by pypar 2.0 using pip Then install pypar using

python setup.py install

I checked using pip freeze and pypar is really installed

I tried pypar in python intrepeter

import pypar

Then i got this error.

[pangrango:02488] mca: base: component_find: unable to open /usr/lib/openmpi/lib/openmpi/mca_paffinity_hwloc: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored)
[pangrango:02488] mca: base: component_find: unable to open /usr/lib/openmpi/lib/openmpi/mca_carto_auto_detect: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored)
[pangrango:02488] mca: base: component_find: unable to open /usr/lib/openmpi/lib/openmpi/mca_carto_file: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored)
[pangrango:02488] mca: base: component_find: unable to open /usr/lib/openmpi/lib/openmpi/mca_shmem_mmap: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored)
[pangrango:02488] mca: base: component_find: unable to open /usr/lib/openmpi/lib/openmpi/mca_shmem_posix: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored)
[pangrango:02488] mca: base: component_find: unable to open /usr/lib/openmpi/lib/openmpi/mca_shmem_sysv: perhaps a missing symbol, or compiled for a different version of Open MPI? (ignored)
--------------------------------------------------------------------------
Sorry!  You were supposed to get help about:
    opal_init:startup:internal-failure
But I couldn't open the help file:
    /usr/share/openmpi/help-opal-runtime.txt: No such file or directory.  Sorry!
--------------------------------------------------------------------------
[pangrango:02488] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
--------------------------------------------------------------------------
Sorry!  You were supposed to get help about:
    mpi_init:startup:internal-failure
But I couldn't open the help file:
    /usr/share/openmpi/help-mpi-runtime: No such file or directory.  Sorry!
--------------------------------------------------------------------------
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL: your MPI job will now abort
[pangrango:2488] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!

I try:

mpirun -np 4 pwd

and it worked/

I tried restart the computer, and I still got the same error. Any idea what might have happened? Thanks.

wfang commented 8 years ago

The error message is coming from OpenMPI, but you mention you are using MPICH. Please make sure you are referring to the right MPI.

daleroberts commented 8 years ago

Thanks @wfang

daleroberts / pypar

Error on import pypar #8