ERROR: several dependecis failed (not available for package ‘phylter’)

[Ofsm]

Hi, I'm having an issue with the installation process. I'm using Rstudio in an Ubuntu 18.04 machine

I used the command, remotes::install_github("damiendevienne/phylter")

remotes::install_github("damiendevienne/phylter") Downloading GitHub repo damiendevienne/phylter@HEAD Installing 3 packages: RcppGSL, RcppZiggurat, Rfast Installing packages into ‘/home/oscarsaenz/R/x86_64-pc-linux-gnu-library/4.2’ (as ‘lib’ is unspecified)

• installing source package ‘RcppGSL’ ... package ‘RcppGSL’ successfully unpacked and MD5 sums checked using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gsl-config... no configure: error: gsl-config not found, is GSL installed? ERROR: configuration failed for package ‘RcppGSL’
• removing ‘/home/oscarsaenz/R/x86_64-pc-linux-gnu-library/4.2/RcppGSL’ ERROR: dependency ‘RcppGSL’ is not available for package ‘RcppZiggurat’
• removing ‘/home/oscarsaenz/R/x86_64-pc-linux-gnu-library/4.2/RcppZiggurat’ ERROR: dependency ‘RcppZiggurat’ is not available for package ‘Rfast’
• removing ‘/home/oscarsaenz/R/x86_64-pc-linux-gnu-library/4.2/Rfast’

The downloaded source packages are in ‘/tmp/Rtmp7cPBeo/downloaded_packages’ Running R CMD build...

• checking for file ‘/tmp/Rtmp7cPBeo/remotes490844613928/damiendevienne-phylter-c0f529b/DESCRIPTION’ ... OK
• preparing ‘phylter’:
• checking DESCRIPTION meta-information ... OK
• checking for LF line-endings in source and make files and shell scripts
• checking for empty or unneeded directories
• building ‘phylter_0.9.3.tar.gz’ Installing package into ‘/home/oscarsaenz/R/x86_64-pc-linux-gnu-library/4.2’ (as ‘lib’ is unspecified) ERROR: dependency ‘Rfast’ is not available for package ‘phylter’
• removing ‘/home/oscarsaenz/R/x86_64-pc-linux-gnu-library/4.2/phylter’ Warning messages: 1: In i.p(...) : installation of package ‘RcppGSL’ had non-zero exit status 2: In i.p(...) : installation of package ‘RcppZiggurat’ had non-zero exit status 3: In i.p(...) : installation of package ‘Rfast’ had non-zero exit status 4: In i.p(...) : installation of package ‘/tmp/Rtmp7cPBeo/file49082853967e/phylter_0.9.3.tar.gz’ had non-zero exit status

  library("phylter") Error in library("phylter") : there is no package called ‘phylter’

Thanks you very much for the help!

Os.

[damiendevienne]

Hello, Apparently you are missing the libgsl library. Can you open a terminal and then type sudo apt install libgsl-dev

after that you can try to reinstall phylter and see what happens. Tell me!

[damiendevienne]

Seems to be solved with the advice given above.