Generate MIMIC Discovery Analysis results (with mean+SD)

[dancoster]

Add also the dosage and way of administration of each drug.

[dancoster]

Share with Dan the sig. pairs.

[dancoster]

Find out which of MIMIC-Longitudinal features are missing from the 'discovery analysis' of mimic, find their ITEM-IDs based on MIMIC-Extract Paper, and run also discovery analysis for this features.

[PavanReddy28]

Vital Signs Med lab pairs

https://drive.google.com/file/d/1UZMtE070I_OajvOOFR0gZzsnXRZaJ235/view?usp=sharing, https://drive.google.com/file/d/1UvOEig8NaAwxS7yZZGid5-0oXgXooI-5/view?usp=sharing, https://drive.google.com/file/d/1UzCz4YTgLCFoe2t9ekKlQ08HrYnwhtx_/view?usp=sharing, https://drive.google.com/file/d/1V64orD1SWmnVEFzMNJEnlfN0rIDPBxTA/view?usp=sharing, https://drive.google.com/file/d/1V7ZF8aDz8Zj8gVTko8GoVYO1EPpiORlZ/view?usp=sharing, https://drive.google.com/file/d/1V9UutlSSjNw1M4JiALWUR-bAmMORwX4W/view?usp=sharing, https://drive.google.com/file/d/1VNAKYLBN8uLpTmdZw2abKcUMgCE9sxJv/view?usp=sharing, https://drive.google.com/file/d/1VQroufcpYPfXM35RonlUE_RZ66nmcLQz/view?usp=sharing

Non Vital Signs Med Lab pairs

https://drive.google.com/file/d/1HbYMsKboTMPmdxg6WS4MLxFuapSWa0HJ/view?usp=share_link

Pending Lab tests

missing_lab_mapping = {
    'Bicarbonate':[50882, 227443, 50803],
    'Blood urea nitrogen':[51006, 781, 1162, 225624],
    'Chloride':[50806, 220602, 226536, 1523, 788, 50902],
    'Lactate dehydrogenase': [50954],
    'Lymphocytes':[51244],
    'Mean corpuscular volume':[51250],
    'Neutrophils':[51256],
    'White blood cell count':[861, 1542, 220546, 51301, 51300, 1127]
}

[dancoster]

Please share the discovery analysis of the vital signs.

[PavanReddy28]

Discovery Analysis Results - Vital Signs - MIMIC

pvals_mimic_vital_signs_all.csv sig_pairs_intersection_mimic_vital_signs_all.csv

[dancoster]

Pavan - can you please re-run the discovery results again, now with the new Non Vital Signs Med Lab pairs that you upload here:

https://drive.google.com/file/d/1HbYMsKboTMPmdxg6WS4MLxFuapSWa0HJ/view?usp=share_link

If that's poblematic, please lmk and I'll do it later

[PavanReddy28]

I have already generated the significant pairs with the above medication lab test pairs. Pvals - https://drive.google.com/file/d/1UsAFwQjxVf3gry3wwsje5gvzVZ27DXoA/view?usp=drive_link Significant Pairs - https://drive.google.com/file/d/1TKHuWz69bW2q9DuJpKNzpifR-S27drEg/view?usp=drive_link