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dandanpeng / ARG_Benchmarking

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run_argv not defined #4

Open hyanwong opened 2 weeks ago

hyanwong commented 2 weeks ago

The loop_pheno_sims_reps.R script calls ../sample_and_run.R which references a variable run_argv (e.g. for(i in run_argv$loci_start:run_argv$loci_end){), but run_argv is not defined anywhere, so the script fails.

hyanwong commented 2 weeks ago

It looks like the variable new_argv has replaced run_argv, but there are still problems running the README instructions because of undefined loci_start and loci_end variables