The loop_pheno_sims_reps.R script calls ../sample_and_run.R which references a variable run_argv (e.g. for(i in run_argv$loci_start:run_argv$loci_end){), but run_argv is not defined anywhere, so the script fails.
It looks like the variable new_argv has replaced run_argv, but there are still problems running the README instructions because of undefined loci_start and loci_end variables
The
loop_pheno_sims_reps.R
script calls../sample_and_run.R
which references a variablerun_argv
(e.g.for(i in run_argv$loci_start:run_argv$loci_end){
), butrun_argv
is not defined anywhere, so the script fails.