danforthcenter / plantcv

Plant phenotyping with image analysis
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Request for help #1579

Open mohamhedba123 opened 1 month ago

mohamhedba123 commented 1 month ago

Hello GitHub Community,

I am working on a research project that involves high-throughput phenotyping of morphological orange fruits characteristics using X-Ray computed tomography (CT). I am particularly interested in any available code related to:

If anyone has developed or knows of any repositories that might be relevant to this topic, please share the links or resources.

Thank you for your assistance!

Best regards,

nfahlgren commented 3 weeks ago

Hi @mohamhedba123, this is not something PlantCV can do at the moment, but I can suggest looking at this paper by Amézquita and colleagues: https://nph.onlinelibrary.wiley.com/doi/10.1002/ppp3.10333. The code they used is available on GitHub here: https://github.com/amezqui3/vitaminC_morphology. I hope that helps!

mohamhedba123 commented 3 weeks ago

Dear Noah Fahlgren

Thank you very much for your prompt response and for sharing the paper by Amézquita and colleagues, as well as the GitHub repository. I appreciate your guidance and will definitely explore the resources you provided.

On Sat, 17 Aug 2024 at 02:54, Noah Fahlgren @.***> wrote:

Hi @mohamhedba123 https://github.com/mohamhedba123, this is not something PlantCV can do at the moment, but I can suggest looking at this paper by Amézquita and colleagues: https://nph.onlinelibrary.wiley.com/doi/10.1002/ppp3.10333. The code they used is available on GitHub here: https://github.com/amezqui3/vitaminC_morphology. I hope that helps!

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