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danielfan / MuSE

Somatic point mutation caller
GNU General Public License v2.0
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Running MuSE call goes segmentation fault on a small sample #4

Open jumpyknight opened 5 years ago

jumpyknight commented 5 years ago

I'm running MuSE on a very small testing sample, which is about 1Mbp in length. My command is MuSE call -f ref.fa tumor.bam normal.bam -O test and the output is segmentation fault after a few seconds, and an unfinished .txt file. I tried to add the -l or -r argument in my command but the output remains the same. I have already tested this sample on a few other somatic callers, so the sample should be fine. Does anyone have met the same problem?

mikisvaz commented 5 years ago

Yes, I get a segmentation fault as well for several samples I have tested.

eriicdesousa commented 4 years ago

I got the same problem when compiling the version from github but it worked fine when I used this binary http://bioinformatics.mdanderson.org/Software/MuSE/MuSEv1.0rc_submission_c039ffa