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danieljue / beast-mcmc

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4 taxa were in the xml file but error messages of "Tree with fewer than 3 taxa" by BEAST #759

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. 4 fasta file, each having 190KB nucldotide
2. Run BEATUi 1.8.1
3. Run BEAST 1.8.1

What is the expected output? What do you see instead?

Running was terminated with error messages

What version of the product are you using? On what operating system?
Windows BEAST 1.8.1

Please provide any additional information below.

dr.xml.XMLParseException: Error parsing '<wideExchange>' element with id, 
'null':
Tree with fewer than 3 taxa
    at dr.xml.AbstractXMLObjectParser.parseXMLObject(Unknown Source)
    at dr.xml.XMLParser.convert(Unknown Source)
    at dr.xml.XMLParser.convert(Unknown Source)
    at dr.xml.XMLParser.convert(Unknown Source)
    at dr.xml.XMLParser.parse(Unknown Source)
    at dr.app.beast.BeastMain.<init>(Unknown Source)
    at dr.app.beast.BeastMain.main(Unknown Source)
Feb 19, 2015 8:36:06 PM dr.app.beast.BeastMain <init>
SEVERE: Parsing error - poorly formed BEAST file, e1.hap.01.xml:
Error parsing '<wideExchange>' element with id, 'null':
Tree with fewer than 3 taxa
java.lang.RuntimeException: Terminate
    at dr.app.beast.BeastMain.<init>(Unknown Source)
    at dr.app.beast.BeastMain.main(Unknown Source)

BEAST has terminated with an error. Please select QUIT from the menu.

Original issue reported on code.google.com by jml.c...@gmail.com on 20 Feb 2015 at 2:04

GoogleCodeExporter commented 9 years ago 
I can't replicate this error. 3 & 4 sequence data sets work fine. Possibly 
something to do with taxon labels? Need more details and/or example XML.

Original comment by ramb...@gmail.com on 5 Mar 2015 at 9:00