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danielldhwang / fastman

fastman is a R package that plots GWAS summaries to Manhattan plots in a fast way.
GNU General Public License v3.0
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GWAS Data Visualization for Manhattan Plot #1

Open uki-uiu opened 2 years ago

uki-uiu commented 2 years ago

Hello! I keep getting this error when trying to run the manhattan plot function on fastman:

fastman(data,chr="CHR",ps="BP",p="P",color = c("darkslateblue", "gold","#ff5733")) Error in seq.default(0, y_max, by = 50) : 'to' cannot be NA, NaN or infinite

Can you help me try to understand this error message? What could be going wrong?

danielldhwang commented 2 years ago

It's a bit difficult for me to understand the error message without your input file.

However, the function is now integrated into our new online platform - CTG-VL: https://vl.genoma.io/updates It does a lot of GWAS data analysis and visualization - including creating Manhattan plots.

Give it a try and see if this solves the problem.

Daniel

On Mon, May 23, 2022 at 5:31 PM uki-uiu @.***> wrote:

Hello! I keep getting this error when trying to run the manhattan plot function on fastman:

fastman(data,chr="CHR",ps="BP",p="P",color = c("darkslateblue", "gold","#ff5733")) Error in seq.default(0, y_max, by = 50) : 'to' cannot be NA, NaN or infinite

Can you help me try to understand this error message? What could be going wrong?

— Reply to this email directly, view it on GitHub https://github.com/danielldhwang/fastman/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB2QP2QUALK5ICZ66KP727TVLMX5ZANCNFSM5WU3EPVQ . You are receiving this because you are subscribed to this thread.Message ID: @.***>

danielldhwang commented 2 years ago

fastman is just updated. Give it a try and see if you still have the same issue. Cheers.

On Mon, May 23, 2022 at 5:31 PM uki-uiu @.***> wrote:

Hello! I keep getting this error when trying to run the manhattan plot function on fastman:

fastman(data,chr="CHR",ps="BP",p="P",color = c("darkslateblue", "gold","#ff5733")) Error in seq.default(0, y_max, by = 50) : 'to' cannot be NA, NaN or infinite

Can you help me try to understand this error message? What could be going wrong?

— Reply to this email directly, view it on GitHub https://github.com/danielldhwang/fastman/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB2QP2QUALK5ICZ66KP727TVLMX5ZANCNFSM5WU3EPVQ . You are receiving this because you are subscribed to this thread.Message ID: @.***>