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danielpodlesny / samestr

SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
GNU Affero General Public License v3.0
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samestr db #13

Closed tulikasriv26 closed 9 months ago

tulikasriv26 commented 1 year ago

I have trying to perform samestr db but getting this error continously. Can you please help in this concern

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tulikasriv26 commented 1 year ago

I have tried making marker_db even outside the directory or in different account at the same cluster. But the same error. I have checked that I have enough memory available

danielpodlesny commented 9 months ago

Hi and apologies for the late reply. It seems like running out of memory was indeed the problem you were facing.

Please make sure to install the latest release of SameStr and feel free to use one of the generated SameStr databases we have uploaded to Zenodo (see https://github.com/danielpodlesny/samestr/issues/18#issuecomment-1936135755).