danielpodlesny / samestr

SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
GNU Affero General Public License v3.0
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Error with pinned conflicts #22

Open slsevilla opened 8 months ago

slsevilla commented 8 months ago

Hi - I'm attempting to install via conda and I'm getting an error regarding a conflict in python and the required packages.

$ conda install -c bioconda -c conda-forge samestr
Channels:
 - bioconda
 - conda-forge
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: / warning  libmamba Added empty dependency for problem type SOLVER_RULE_UPDATE                                                                                    failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package samestr-1.2023.3-pyhdfd78af_0 requires scipy 1.10.0, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
├─ pin-1 is installable and it requires
│  └─ python 3.12.* , which can be installed;
└─ samestr is not installable because it requires
   └─ scipy 1.10.0  but there are no viable options
      ├─ scipy 1.10.0 would require
      │  └─ python >=3.10,<3.11.0a0 , which conflicts with any installable versions previously reported;
      ├─ scipy 1.10.0 would require
      │  └─ python >=3.11,<3.12.0a0 , which conflicts with any installable versions previously reported;
      ├─ scipy 1.10.0 would require
      │  └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
      └─ scipy 1.10.0 would require
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.

Pins seem to be involved in the conflict. Currently pinned specs:
 - python 3.12.* (labeled as 'pin-1')