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danielpodlesny / samestr

SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
GNU Affero General Public License v3.0
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Request to Add a Sample File to the Repository #28

Closed yuzh321 closed 2 months ago

yuzh321 commented 3 months ago

Hi,

Could you please add a sample output file to the samestr repository? I'm trying to understand the output format from the summarize command, but I couldn't find any examples in the documentation or on GitHub. Having a sample file would be incredibly helpful for better understanding and utilizing this tool.

Thank you very much for your assistance!

danielpodlesny commented 2 months ago

Hi thanks for your suggestion!

I added an example output for the samestr stats command that you would run after filtering the SNV profile https://github.com/danielpodlesny/samestr/commit/d3a8c364cec20ca31d0c3f196d40a3a93537e59d, as well as three example output files from the samestr summarize command https://github.com/danielpodlesny/samestr/commit/7810b8d0b7db10171436442a6b040ac31dde078b that you should expect as a final output. You can find them at samestr/example