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danielpodlesny / samestr

SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
GNU Affero General Public License v3.0
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Do you have the command for reference genomes #9

Closed StickHu closed 1 year ago

StickHu commented 1 year ago

I am working on the project and stuck on the samestr extract. Can you tell me the command line for generating reference genomes? Thanks

danielpodlesny commented 1 year ago

Hi @StickHu ,

I'm not sure what you mean with "generating reference genomes". You can find the command for SameStr extract here. This will extract the marker regions from existing reference genomes if that is what you're trying to achieve.