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danielriosgarza / MAMBO

GNU General Public License v3.0
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Can not install the package #2

Closed yejunbin closed 6 years ago

yejunbin commented 6 years ago

I git clone MAMBO and install it through " python setup_bte_functions.py install", here is the log info:

running install running build running build_ext skipping 'bottom_up_ecology.c' Cython extension (up-to-date) running install_lib creating /home/ye/python2.7/lib/python2.7/site-packages/bottom_up_ecology copying build/lib.linux-x86_64-2.7/bottom_up_ecology/pyx.so -> /home/yejunbin/python2.7/lib/python2.7/site-packages/bottom_up_ecology running install_egg_info Removing /home/ye/python2.7/lib/python2.7/site-packages/UNKNOWN-0.0.0-py2.7.egg-info Writing /home/ye/python2.7/lib/python2.7/site-packages/UNKNOWN-0.0.0-py2.7.egg-info

import bottom_up_ecology

ImportError: No module named bottom_up_ecology

adamtongji commented 6 years ago

We install all dependencies, but still meet same import error for "bottom_up_ecology" and the "bottom_up_ecology_functions".

danielriosgarza commented 6 years ago

The functions were written in Cython, so they require compilation with the setup.py script.

The way I do it is, from my working directory, I execute the terminal command:

$ python setup.py build_ext --inplace

After which I can import to a python session also in this directory.

I am sure there are other ways to compile it (I didn't try, but you can check here: http://cython.readthedocs.io/en/latest/src/reference/compilation.html). Let me know if you still face any issues.