danielseaton corrall issues

danielseaton / corrall

corrall (CORRelation analysis of ALLele-specific expression) provides tools for aggregating GATK allele-specific expression output across sets of SNPs and individuals.

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Integrate with output from cellSNP (as another option compared to GATK ASEReadCounter)

#13 danielseaton opened 5 years ago
0
Handling "chr#" vs "#" formats of chromosomes

#12 danielseaton opened 5 years ago
0
Filter SNPs to quantify ASE for based on donor genotype, not ASE counts

#11 danielseaton opened 5 years ago
0
allow option of outputting ASE fractions or counts after phasing relative to eQTL SNPs

#10 danielseaton opened 5 years ago
0
separate chrB count file merging from phasing to eQTL SNP functionality

#9 danielseaton closed 5 years ago
0
Convert linear models to LIMIX, including GLMMs, with random effects and covariates

#8 danielseaton opened 5 years ago
0
Regression tests for linear models

#7 danielseaton opened 5 years ago
1
Move linear model code to a module

#6 danielseaton opened 5 years ago
1
Take input from alternative ASE quantification pipelines

#5 danielseaton opened 5 years ago
0
phase ASE across cells from multiple donors, using a reference SNP

#4 danielseaton closed 5 years ago
0
tests for vcf_utils

#3 danielseaton opened 6 years ago
0
Use input table with file locations for aggregate_data_by_donor

#2 danielseaton opened 6 years ago
0
Check SNP ID, not just position, when querying in vcf_utils.py

#1 danielseaton opened 6 years ago
0