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danknights / mwas

Perform microbiome-wide association studies with a variety of models
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plot_gradients.r fails when shortening taxonomy on some input files #1

Open danknights opened 10 years ago

danknights commented 10 years ago

$ Rscript $MWAS_DIR/bin/plot-gradients.r -i seqs_V4V6_R1only_otus_metadata_Pygathrix_nemaeus_L6.txt -d Douc_V4V6_R1only_SplitOTUs_unweighted_unifrac_dm.txt -o L6_n30_Douc_splitOTUs_V4V6_R1only_unweighted_gradients_e2000 -n 30 -s

Error in x[, taxon.names[i]] : subscript out of bounds Calls: show.gradients Execution halted

input files:

http://goo.gl/KZFo4G http://goo.gl/Y9iSq1