Output probability from random forests, knn, log. regression, svm, etc.

danknights / mwas

Perform microbiome-wide association studies with a variety of models

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Output probability from random forests, knn, log. regression, svm, etc. #15

Closed danknights closed 9 years ago

GabeAl commented 10 years ago

RF: predictStruct$prob SVM: Included in S3 predict inheritor as $probabilities KNN: Ad-hoc calculation by number of votes over number of neighbors (edit; $prob in return attribute after running KNN) GLMnet: has a probs (when response used)?