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danlwarren / RWTY

R We There Yet?
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test MCC tree is accurate #143

Open roblanf opened 4 years ago

roblanf commented 4 years ago
  1. Get an MCC tree for a dataset (with predefined burnin) from tree annotator or similar
  2. Get an MCC for the same dataset (with same burnin) from RWTY
  3. Check they are the same

This should use a small dataset (e.g. ~200 trees) and the relevant MCC tree from tree annotator as input. There are functions in ape to check if trees are equal.

  1. Extend this in another test to do the same for multiple chains.