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dantaki / SV2

Support Vector Structural Variation Genotyper
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Is SV2 suitable for plant genomes? #15

Closed songtaogui closed 6 years ago

songtaogui commented 6 years ago

Dear SV2 developer,

The tutorial of SV2 showed how to call SVs using Human WGS data, I was wondering that is SV2 suitable for SV calling in plant genomes?

Thank you!

best wishes!

Songtao Gui

dantaki commented 6 years ago

Not at the moment, I am working on a new fix that will allow users to specify exclude and FASTA files for their species. Note that the classifiers were trained on diploid organisms, so if your organism is not diploid there is no way for SV2 to work correctly.

songtaogui commented 6 years ago

Thanks for your reply. Looking forward to the new version of SV2.

Best wishes!

Danny Antaki notifications@github.com 于2018年6月17日周日 上午1:18写道：

Not at the moment, I am working on a new fix that will allow users to specify exclude and FASTA files for their species. Note that the classifiers were trained on diploid organisms, so if your organism is not diploid there is no way for SV2 to work correctly.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dantaki/SV2/issues/15#issuecomment-397827000, or mute the thread https://github.com/notifications/unsubscribe-auth/ANnPGj0bx64jZ5sa2OiZ3ZGg37jlYgyHks5t9T4BgaJpZM4UqgHi .