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darelab2014 / Dinopore

DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
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Raw data not available on SRA #5

Closed ChaseWLW closed 1 year ago

ChaseWLW commented 1 year ago

Dear authors,

I was hoping to re-basecall and analyse the read data in Dinopore. However, the SRP record SRP363295 as provided in the paper has many empty entries, e.g. the mouse and frog ones.

Could you please take a look into this? Thanks for the great work!

hengjwj commented 1 year ago

Hi @ChaseWLW , sorry for the late reply and thanks for trying out our method. I've checked some of these that show 0 spots and 0 bases. The files are actually available in "original format" (shown below).

gBlock image image

Mouse Brain image image

MamgKhushi commented 5 months ago

Hello, Thank you very much for your paper and the tool. I would like to use your Dataset for mouse with some of mine to try dinopore but I do not have access to guppy, so I can not use the fast5 files directly. Is there anyway I can get the basecalled fastq files for mouse samples to use the tools? It would be really helpful for me if possible, so please let me know.

Thank you very much in advance.