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dariober / ASCIIGenome

Text Only Genome Viewer!
http://asciigenome.readthedocs.io/en/latest/description.html
MIT License
206 stars 14 forks source link

Corrupted TabixIndex #38

Closed dariober closed 6 years ago

dariober commented 7 years ago

The tabix index created via htsjdk may skip the first interval of the first contig under certain cases. See https://github.com/samtools/htsjdk/issues/393 for an example.

While we wait for htsjdk to fix this, a temporary hack may be to add a dummy first record on the files susceptible of this bug.

dariober commented 7 years ago

Fixed with a horrible hack which prepends a dummy feature to the tmp bgzip files. This dummy feature is ignored by all (?) methods.

dariober commented 6 years ago

This bug is fixed in v1.14 after upgrading htsjdk.