Closed PubuduSaneth closed 4 years ago
Thanks for reporting it. This issue should be fixed in the latest conda recipe 0.15.0-1 and associated biocontainer 0.15.0--r36h4b26f60_1:
docker pull quay.io/biocontainers/cnv_facets:0.15.0--r36h4b26f60_1
docker run --rm -it quay.io/biocontainers/cnv_facets:0.15.0--r36h4b26f60_1 bash
cnv_facets.R -h
The problem was that r-argparse requires python. If you install cnv_facets via conda you already have python so everything works fine. However, if you run via docker you get the issue described here. So, the new conda recipe adds python as dependency.
cnv_facets:0.15.0--r36h4b26f60_1 works perfectly and thank you very much for fixing this very quickly...
Dear Dario
I tried cnv_facets biocontainer docker images (tags = 0.12.1--r351_0 and 0.15.0--r36h516909a_0). However, both images failed to execute cnv_facets.R. Those error messages are as follows...
cnv_facets:cnv_facets:0.12.1--r351_0
cnv_facets:0.15.0--r36h516909a_0
Although docker images from biocontainers failed to execute the R script,
conda install cnv_facets
can install the program properly. So I created a cnv_facets docker image using miniconda3 base image and sharing it here, in case if it helps other uses...