Closed wclee47 closed 4 years ago
Hi - LCN_EM="." means the value is missing (NA). As to the reason why it happened and how to interpret it, I can't tell for sure especially without seeing the data. It may be the region is hypersegmented. Maybe the discussions at https://github.com/mskcc/facets/issues/62 and https://github.com/mskcc/facets/issues/50 help?
Keep in mind that cnv_facets is just a wrapper around the FACETS package so these sort of questions may be better answered by the developers of FACETS.
(Closing the issue now but feel to reopen)
Dario
Hi Dario, thanks for this program. In the output, some segments have LCN_EM set to ".". I think this might be different from the value "0". Do you have any idea how to interpret the value "." in LCN_EM?
Appreciated!