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dariober / cnv_facets

Somatic copy variant caller (CNV) for next generation sequencing
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Can I force the ploidy to a specific value (experimentally validated) in facets? #28

Open Francesc-Muyas opened 3 years ago

Francesc-Muyas commented 3 years ago

Hi, I have some human cell line data whose original ploidy is not 2n. In fact, it is 4n. Is there any way to force the ploidy to this value when running cnv_facets in this sample? With that, I expect to have the real TCN of the cell for each chromosome.

Thanks