When using addCohortIntersectCount() with a cohort that has an extra column (in the example below, the extra column is year_of_birth), the following warning appears:

> Warning: The following columns will be overwritten: year_of_birth

However, it does not happen with the extra column date_of_birth.

library(DrugUtilisation)
#> Warning: package 'DrugUtilisation' was built under R version 4.3.3
library(PatientProfiles)
#> Warning: package 'PatientProfiles' was built under R version 4.3.3
library(lubridate)
#> 
#> Attaching package: 'lubridate'
#> The following objects are masked from 'package:base':
#> 
#>     date, intersect, setdiff, union
library(dplyr)
#> 
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#> 
#>     filter, lag
#> The following objects are masked from 'package:base':
#> 
#>     intersect, setdiff, setequal, union

cdm <- mockDrugUtilisation()

cdm[["cohort1"]] |>
  addDateOfBirth() |>
  mutate(year_of_birth = year(date_of_birth)) |>
  addCohortIntersectCount(targetCohortTable = "cohort2")
#> Warning: The following columns will be overwritten: year_of_birth
#> # Source:   table<og_011_1714683955> [10 x 9]
#> # Database: DuckDB v0.9.2 [martaa@Windows 10 x64:R 4.3.2/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    1          1 2020-09-20        2021-03-18     
#>  2                    3          2 2022-05-21        2022-06-05     
#>  3                    3          6 1991-05-25        1992-04-18     
#>  4                    1          7 2015-09-10        2018-05-02     
#>  5                    3          8 2012-02-04        2012-02-15     
#>  6                    2          9 2022-10-05        2022-11-12     
#>  7                    1         10 1997-11-07        2003-08-04     
#>  8                    2          3 2010-02-10        2010-07-21     
#>  9                    1          4 2022-01-26        2022-04-28     
#> 10                    3          5 2019-07-17        2019-12-26     
#> # ℹ 5 more variables: date_of_birth <date>, year_of_birth <dbl>,
#> #   cohort_3_0_to_inf <dbl>, cohort_1_0_to_inf <dbl>, cohort_2_0_to_inf <dbl>

^{Created on 2024-05-02 with reprex v2.1.0}

darwin-eu-dev / PatientProfiles

Warning when using addCohortIntersectCount() #650

> Warning: The following columns will be overwritten: year_of_birth