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dasmoth / dalliance

Interactive web-based genome browser.
http://www.biodalliance.org/
BSD 2-Clause "Simplified" License
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Genes, Transcripts of genes not differentiated by type #4

Closed timjph closed 10 years ago

timjph commented 13 years ago

Both genes and transcripts have multiple types (particularly in GENCODE, as defined here at UCSC - http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=172011164&c=chr21&g=wgEncodeGencode).

At present this is not visually distinguished, making it non-obvious to a user that they are looking at a psuedogene rather than a gene at the extreme. Parts of this are general, parts are specific to gencode - maybe its the stylesheet of the DAS source?

dasmoth commented 13 years ago

This will need a few changes in biojava-ensembl as well, but should be fixable.

I assume it's best to match the colour scheme at the UCSC link you've given?

dasmoth commented 10 years ago

(Closing some old issues).

We colour by biotype for the GENCODE-derived bigbed gene tracks.